National Agricultural Genotyping Center

The NAGC is working with the USDA and university labs to identify Xanthomonas in corn and in cotton. As the top corn producing country, there is a strong need to provide US farmers with reliable and early disease detection for a variety of pathogens, particularly for the recently confirmed Bacterial Leaf Streak Disease (BLSD).  BLSD is caused by a bacteria, Xanthomonas vasicola pathovar vasculorum (Xvv), which was thought to be restricted to South Africa. The first reported detection of Xvv in the US was in Nebraska last year (2016) and further surveying has confirmed its presence in several other states (Minnesota, South Dakota, Iowa, Colorado, Illinois, Kansas, Texas and Oklahoma) with more being added (USDA-APHIS, 2016, August 29 and Institute of Agriculture and Natural Resources, University of Nebraska-Lincoln. 2016, August 26). Symptoms of BLSD are similar to other diseases, making visual diagnosis difficult to impossible.

Due to its recent introduction to the US, the epidemiology (control and spread) of BLSD is largely unknown, but it is likely that foliar fungicides typically used against gray leaf spot will be ineffective against this bacterial disease.

Through the USDA’s collaboration, the NAGC has been able to modify the initial assay to allow for a greater number of samples (high throughput) to be analyzed in a shorter period of time. This information gathered will allow for a better understanding of the transmission of the disease and protect producers from further spread within the US. There are only a few research labs that can support and are capable of developing high throughput assays using the latest molecular instrumentation that the NAGC possesses. This assay has the potential to screen other plants that may not yet be identified as alternative hosts (e.g. cotton, food crops or weeds) to the bacteria, which have been important sources in particular strains of Xv pathovars (Coutinho, et al., 2015)

Importantly, optimization of the assay will enable producers to test a variety of potential contaminated sources (farming equipment, seeds, soil), which can help market corn for exportation as well as assert liability of contamination from farming equipment that moves from field to field. Furthermore, this assay will provide a more reliable diagnosis, allowing producers to be more proactive in their management strategies.


The National Agricultural Genotyping Center is supported through a public and private partnership of leading research and trade organizations including Los Alamos National Laboratory and National Corn Growers Association. The Los Alamos National Laboratory (LANL) will provide the technological and informatics expertises to maintain technological advancements and ensure diverse genotyping needs are met. In order to maintain close ties to the agriculture sector, the NAGC has partnered with the National Corn Growers Association (NCGA). NCGA represents 35,000 dues-paying corn farmers from 47 states and the interests of more than 300,000 growers who contribute through corn checkoff programs.


NAGC growers are providing the highest quality productsfor human consumption

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General inquiries

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Laboratory Inquiries

T: 701-239-1451

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